Acrobat bookmarks are lost when resaving the file

Hi,
I am converting a docx to pdf using Save as --> PDF --> clicking on options and selecting create bookmarks using headings and publish.
The conversion is done perfectly. However after encrypting, or changing a name of a bookmark and saving after that, the bookmark links are lost. When I right click on any bookmark and checking there link, there is nothing.
I noticed that if I use Microsoft Word 2007 with SP2 this problem is resolved. However, I have various pdfs already converted (and don't have the original doc) which I need to encrypt. However this is not possible to do so as they lose their bookmarks.
Is there a solution for this?

I am seeing a similar bug in Acrobat, and I am seeing it in both Acrobat 7 and Acrobat 9.
If I have an open PDF, and I choose File > Save As, then rename the PDF, all bookmarks are lost.
Gone. Poof. Bye-bye.
If I rename the file in Windows Explorer, the bookmarks are retained just fine.
This happens without exception. Every PDF file.
I simply cannot use the File > Save As command at all. Ever.
First detected it in Acrobat 7, and I am still seeing this behavior in Acrobat 9.

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Part of path lost when importing autogenerated files

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Have two Framemaker 8 books, one of which contains all the files for a future publication, including LOT, LOF and IX. This is the full publication but most of it is still heavily in draft. The second book represents the first release of the publication and has only a small subset of agreed content. The idea is that the publication will grow in time.
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Subject: FrameMaker General Discussion Part of path lost when importing autogenerated files
It would be really helpful if you might do a screenshot of the File Manager hierarchy of folders and insert them into your posting, maybe use callouts to annotate the various significant levels -- a visual would really, really make it much easier to interpret what you're describing.
>
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Acrobat bookmarks are lost when resaving the file

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