Additional audio tracks not showing up in my movie library. Thoughts?

I have movies in both .mp4 and .m4v format with multiple audio tracks (all AAC 96kbps; 48kHz - video is .h264). When imported into iTunes, I cannot choose the alternate video tracks. However, i know that they work, because I check them in both VLC and Plex and everything is as it should be. I have made sure that the formats meets the specs of both iTunes and the AppleTV 3rd generation (which displays the same issue).
I have accomplished this in iTunes a few weeks ago successfully so I am not sure what I am doing wrong this time. My goal is to build a collection with available audio commentaries. I am starting to Winder if iTunes holds a limit on audio track in a video. For instance - The Matrix has an addition 4 audio commentary tracks.
I remuxed all of these myself and have a history in digital video production. If anyone has any suggestions for something simple (or not) that I may be overlooking I would greatly appreciate your input.
Thank you!

Hi drak0772,
If you are having issues using Disney Movies Anywhere through iTunes, you may find the following article helpful:
Apple Support: About Disney Movies Anywhere and iTunes Store
http://support.apple.com/kb/HT6129
Regards,
- Brenden

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Deba007 wrote:
Actually I dont keep my audio tracks in my Hard Drive but its in DVDs and CDs. Therefore I import them into the itunes library and transfer them to shuffle manually and then delete them from the itunes library.
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Message was edited by: 0Ari0

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Thanks King_Penguin for taking time to read and reply.
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Additional audio tracks not showing up in my movie library. Thoughts?

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