Adobe 9 - PDF Portfolios - Document Management System

I am having a  problem with PDF porfolio's not being content searchable in Hummingbird document management system.  I'm not sure if it's Adobe or Hummingbird. 
All of our searches have to come from the document management system, and if the document is a stand-alone PDF - the search will pull from it's contents, however if the PDF is within a portfolio, the content will not come up within the search.
Any help or direction will be greatly appreciated!
Thank you!

Just an observation. Portfolios can be "searchable".
A Catalog index of Portfolios within a directory lets Acrobat's advanced Search pull from the PDFs that are the attached files that comprise a Portfolio.
Just a guess but the "wrapper" PDF with the Flash UI that is the Portfolio may be precluding your CMS's indexing/search from working.
Be well...

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