Adobe Media Encoder: Audio won't export with video

I am trying to convert an AVCHD video for viewing on my iPad 3. I use Adobe Media Encoder and select the iPad 2 settings (1920x1080) and it exports the video perfect, but no audio. I have "Export Audio" checked off. I tried it with 5 other settings and it just wont include the audio. Any ideas?

Seems random people are running in to this, so hopefully this solution will be found by whomever's looking.
If you're exporting video files from Final Cut Pro as .mov, and then trying to convert said .mov to an .mp4 using Adobe Media Encoder and are losing audio even though you're multiplexing, try this...
Make sure that you export only a 2-channel audio track from FCP.   When I export from FCP, I split my audio into various tracks by default.  Great for making master clips, but problematic if uploading to YouTube or doing further encoding in Adobe Media Encoder.   Like YouTube, if you have more than 2 tracks of audio, Media Encoder seems to get confused and ignores all audio tracks.  Combine all audio into a 2-channel stereo track and see if that solves the problem.
Regardless of editing program, see if reducing number of audio channels from source clip solves problem.

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