Adobe prem / media encoder h.264 blu-ray jitters, flickers /w slow-mo

hello
using the Adobe Production Premium CS4 pack... hardware is not an issue, also all the latest updates are installed.. prem 4.2.1 (003), encoder 4.2.0.006
after export and authoring, we are having strange glowing flickers, and bad slo-motion effect playback
the problem seems to be consistent with slo-motion and time remapping, frame holds and especially when an additive dissolve is thrown in.
the edit's are far from saturated with these effects, but a simple frame-hold with motion-rotation and motion-scale occurring with keyframes. the problem also happens with something as simple as a 30% speed/duration added onto a clip..
the footage is captured and on a timeline at - 1440x1080 (1.3333) HD Anamorphic, 25fps (50i)
the export profile after edit is - H.264 Blu-ray - 1440 x 1080i 25 High Quality
i get the feeling the problem may be occurring as the footage is remaining as interlaced footage through-out and not being blended or discarded to progressive.
i have tried making the footage progressive on export thinking it might solve the problem, but it turns out there is no such thing as progressive HD PAL in media encoder and encore
i love adobe's workflow but we have never been fond of main-concept from the start with things like this, even Mpeg2-DVD exports come out softer than you'd expect
any thoughts, light or general directions on what to do to help figure out the problem would be great..

after around 30 small sample exports, builds and different renders... I have discovered the problem and am now on track to fixing it..
it turns out certain adobe effects such as 'lighting effects' do NOT work well with slo-mo or frame held clips.. upon taking this one effect off, the clip looks flatter and less dynamic in context of my edit, but the clip plays normally no matter what the export settings, codec or format..
what's hallarious is that these effects and edits export and author perfectly fine onto DVD through Mpeg2.. i guess they just flatten better etc.. i get the impression when Adobe started crafting their software for HD they just built on top of the normal effects etc they already had and expected them to work.. if only Premiere could get the updates, priority and attention Photoshop does..
again, i love premiere's work flow, i just can't see how they can put the word 'Pro / Professional' near this software...
many thanks all
Steve

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    Message was edited by: Alan Craven

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    Well, instead of encoding one media file per chapter, I ended up encoding the entire title into one large media file. It imports fine and builds ok, sort of. The thing is that I can burn it directly to disk, but if I try building an image file out of Encore project, my whole physical memory on the machine goes down to zero about half way, and from then on things get REAAAALLLYYYYYY SSSSLLLLLOOOOOWWWWW. Eventually, I have to shut down the machine - the progress bar moves a tick in half an hour and this is just not practical.
    I remember back in Encore 1.0 days there was a huge issue with building an Encore project with subtitles. I would give up after 2-3 hours of staring at "Building subtitles" message. I finally contacted Adobe tech support and expressed my concerns. They asked for the project file and assets, which I provided, then went silent for several days, then said that it all built fine on their system, and I just have to give it more time. So, I decided to give it more time. I gave it 48 hours, and it built in 28. Now, 28 hours of build time for a 1.5 hours DVD project is unreasonable. Adobe support did not buy 28 hours as being unreasonable. But what do I know - version 1.5 comes around, and the same project builds in about an hour. Suddenly, 28 hours is unreasonable.
    I was hoping that with CS3 we would not go back to version 1.

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    When I export the file under H.264, Adobe Encoder won't even load the project file. However, it loads and completely exports my 25 minute 1080p HD 24 fps film under the H.264-Blu Ray option which takes about 17 hours on my Dinosaur PC.
    So basically, I already have a 25 minute 4 gig film on a Blu-ray disc that I burned at my friends Modern computer, and now I just want a standalone MP4 file as a backup.   
    Anyone?
    Bill Hunt?
    Specs,
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