Advanced Dock and hard drive in drive bay

I'm trying to set up a backup hard drive for a Lenovo T61 in the Advanced Docking station.  Whenever I boot up with the hard drive connected it takes around 20-30 minutes to boot to the Windows log in screen.  When the T61 is disconnected for the boot up it will take the normal time to boot.  When I connect the T61 after start up it will see the hard drive that is in the bay.
What seems to happen is when the T61 is connected to the docking station, it runs a chkdsk on the drive in the bay before loading Windows.  This happens every time that the laptop is connected to the docking station upon powering up or restarting.
The hard drive that I have in the bay is a Hitachi 160 GB, 7200 RPM (the one supplied by Lenovo).
Any help on getting the boot up to go at the normal speed would be appreciated!

The_Sauce, welcome to the forum,
a shot in the dark; does the bay hard drive show up in the BIOS boot list? What happens if you exclude it?
Let us know
Andy  ______________________________________
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