After BIOS flash, case buttons no longer work 790FX-GD70

Hello,
I was getting a Hypersink flood error and with much research found that a flash of the bios is a fix for this.
I have flashed the BIOS plenty of times on other motherboards. BIOS flash went smoothly (I used this forums bootloader). Ever since flashing of the BIOS, I can't turn on the computer unless it is through the power button on the motherboard itself. I have tested the switch independently and they work fine. Post is fine, runs windows fine, time and date are correct, etc...
Anyone have any ideas on how to fix this?
Equipment:
Motherboard: MSI 790FX-GD70 c3
Chip: AMD Phenom II x4 955
BIOS software: Latest version

After an update of BIOS, pull power cable out and clear CMOS.
However, I am not sure the BIOS update and a non-working power-button are related. What case have you got?
Please say if your system uses a PSU, and if so name and model.

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After BIOS flash, case buttons no longer work 790FX-GD70

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