After downloading updates for apps to PC they are not syncing over to phone.

Hi, I have noticed today that if  I download app updates to my PC for my iphone 4 or ipad 3, they are not updating on the devices when syncing.
Running latest iOS on devices and using Itunes 11.0.1.12
Have seen on the app page on PC, you can select each app to update, but can it be done automatically ?

same thing is with iphone 5. yesterday i downloaded the last updates and now cant sync the music files.

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