After effects clip doesn't appear in finished film

I have produced a short film in premiere pro with a 6 second after effects clip at the end.  When I export it to encoder to produce a FLV/F4V film for youtube,the after effects clip does not appear even tho I can see it encoding and there is a 6 second blank film at the end.  I don't understand this as I have done this a few months previously on another premierepro film and could see the after effects clip.  I have repeated the encoding on the earlier film and now cannot see the AE clip.  I have slightly changed the AE clip - only changing the font colour so nothing major.  I am working with CS4
Any ideas as to whatis happening?
PhoebeSparke

Hi Mark
It was a stupid mistake on my part - the AE project was set at 24fpm whereas the Premiere Pro project was set at 25fpm so I guess they were contradicting each other.  I'm still not sure how this could have happened but I am glad I have sorted it.  Thanks very much for your interest
PhoebeSparke

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