After formatting and creating two partitions on my external HD, why is Time Machine taking 25x longer to perform a backup?

Hi.
I bought a macbookpro 13"retina, new two weeks ago and a G-tech 1TB external drive from the apple store. It's my first mac.
I performed a backup, using Time Machine, which copied 18 GB onto he 1TB external HD in around 20 minutes.
After a little more reading, I realised I should use Disk utility to partition the 1TB external G-tech drive into a 250gb partition, and a 750gb partition.
[My MBP has a 250gb flash HD. I'll use the other 750gb for storage of my other files, like photos, music etc.]
So, using disk utility I formatted the 1TB exernal drive, then created two partitions.
However, I've started backing up my data using time machine again, onto the 250gb partition, on the external drive, and its now taking 5 hours to copy the 19.81GB
So why is it taking 25x longer than the first time I did it? [First time it took 20 minutes]
Thanks

Since performing the fist backup, a couple of days ago, which took twenty minutes, and the second backup, which is taking 5 hours, I installed MS office for Mac 2011 and Silverlight.
Dont know if thats responsible?

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