After iBooks purchase on iPad, Books sync in iTunes incorrectly switches away from "All Books"

Background:
iTunes 11.4 on OSX 10.9.5
iPad running iOS 8.0 (12A365)
iPhone running iOS 8.0 (12A365)
same behaviour observed w. iOS 7.x and iTunes 11.x
I have a largish library of ~500 books and PDFs, managed via Books v1.0.1 on OSX. I sync all of my content to both the iPhone and iPad in its entirety as it contains both light reading and technical content for work and reference.
I've noticed that sometimes my library of books gets out of sync between the three devices and hadn't narrowed the cause. Last week I got caught without some important info available to me due to the issue, so I invested some time tracking it down.
Issue:
With iTunes set under the Device sync setting to sync "All Books" and both ends currently in (content) sync, if you make a purchase on the iPad/iPhone via iBooks so that a new book is added to the device library … and then plug in via USB to OSX and sync the device in iTunes. iTunes will toggle the "All Books" option to "Selected Books" and only select the single entry just purchased.
That causes the new book to be synced successfully to the OSX Books library (where it was already pending as a cloud purchase anyway), but now the issue is that iTunes retains the "Selected Books" sync setting going forward for that device (with whatever context that may be referring to lost). Hence further additions to the OSX Books library and/or the iPad/iPhone library are ignored for syncing going forward, until such time as you realise and manually revert the setting to "All Books" as required.
It seems some of the behaviour on book purchasing/library changes is definitely broken and has been so for quite some time (at least last 2-3 releases of iTunes). Interestingly, adding a PDF to iBooks on the iPad/iPhone (such as via the services menu from a Safari page) seems to trigger the behaviour sometimes but not with the same repeatability.
Can anyone else verify this behaviour or know if its a reported issue?

Sorry, I was only able to get back to this issue today, but it worked.
Thank you again Michael for your help. It was as simple as just buyng a free book from the iTunes store to create a Books area, then I was able to drag and drop my 3rd party book there.
Still, I feel that there should already be a Books area in iTunes, but perhaps I am the only one who has updated iTunes on a computer without any previously purchased books on it from the iTunes store.

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