After importing my JPEGs, the matching RAW-Files aren't found! Why?

I shot JPEG+RAW-Couples with my Canon EOS 450D (aka Rebel XSi) and imported the JPEGs into Aperture 3.1.3. When I wanted to import the matching RAW-Files later, Aperture didn't recognize one of them. I didn't change anything at the files. Importing both as a couple works without any problems.
What's the mistake? Can I fix it or is it a bug?
Thanks in advance!

Users have reported problems with Aperture when Projects hold too many Images.  How many is "too many"?  No one knows -- I keep all projects under 1,000 Images, and even then very rarely go over 500.
Projects should be subsets of your Library.
Aperture was designed around the general topology of "one Project per shoot".  From the User Manual:
"Projects: The basic containers used in Aperture to organize images by shoot."
I have found that sticking to this topology seems to keep gremlins at bay.
Message was edited by: Kirby Krieger, added text and links.

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    Thanks very much for that lead, NormanPCN. I do have Auto Tone checked, though the rendered files in the example above do not have XMP sidecars. I will try unchecking Auto Tone even so, and post back when I see what happens.
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    mscriv wrote:
    So, I'm using Aperture 2 and I've got some questions about exporting from RAW to JPEG. I shoot with a Nikon D70 so original RAW files are 5-6mb in size. After doing some basic post processing when I export the pics at "full size" with picture quality of 11 out of 12 then the resulting JPEG is about half the file size of the original RAW file. For example a 5.6mb RAW becomes a 2.6mb JPEG. The resolution in pixels per inch and and the overall image size remain unchanged. Have I lost picture quality due to the exporting JPEG being smaller in file size?
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    Op 28 feb 2010, om 16:34 heeft Omke Oudeman het volgende geschreven:
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    >
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    >
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    >
    >
    >> I can't figure it out, has anyone got an idea ???
    >
    >

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