After Yosemite, numerous problems on Mac Mini with Custom Fusion Drive

I have installed OS X Yosemite on a Mac Mini with a "homemade" fusion drive.  The update seems to have completed, although the following problems are evident:
Missing menu items from the menu bar, including the apple menu, notifications, time machine and others
Menu bar items return after booting non-apple software (MS Office, for instance), but disappear again once apple apps are running (App Store).  You can mouse over these menus, even though their respective icons are not there, and access the content within the menus.
iTunes crashes upon launch; app store launches, but no content loads.  Additionally, the app store menu item under the missing apple menu location, shows 4 software updates are available, but cannot load the app store content in order to access the updates.
Safari loads, but enters a continuous loop of "A problem occurred with this webpage so it was reloaded."  Then, a application quit notification window appears, stating "Safari Web Content quit unexpectedly."
Lots of spinning beachball now that was not happening prior to update.
I've tried resetting the machine numerous times.  Nothing seems to fix the problem(s)
The machine seems to recognize the fusion drive in system report, and all files are accessible in finder, so I don't think the fusion drive is the issue.
Any suggestions, pointers, fixes?

I have installed OS X Yosemite on a Mac Mini with a "homemade" fusion drive.  The update seems to have completed, although the following problems are evident:
Missing menu items from the menu bar, including the apple menu, notifications, time machine and others
Menu bar items return after booting non-apple software (MS Office, for instance), but disappear again once apple apps are running (App Store).  You can mouse over these menus, even though their respective icons are not there, and access the content within the menus.
iTunes crashes upon launch; app store launches, but no content loads.  Additionally, the app store menu item under the missing apple menu location, shows 4 software updates are available, but cannot load the app store content in order to access the updates.
Safari loads, but enters a continuous loop of "A problem occurred with this webpage so it was reloaded."  Then, a application quit notification window appears, stating "Safari Web Content quit unexpectedly."
Lots of spinning beachball now that was not happening prior to update.
I've tried resetting the machine numerous times.  Nothing seems to fix the problem(s)
The machine seems to recognize the fusion drive in system report, and all files are accessible in finder, so I don't think the fusion drive is the issue.
Any suggestions, pointers, fixes?

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