AI (illustrator) layers not showing up in AE (after effects) CC 2014

I've just come across this issue for the first time. I've imported AI files into AE many times before and had no issues like this one.
After importing the layered AI doc into AE, only one layer will show up. Attached is a video I recorded of what happens. If you can make sense of it, please let me know. Note: I can save out eps as separate files and use those in AE no problem.
I'm working on a macbook pro retina and just did a fresh format about 2 weeks ago so everything is up to date. I've tried restarting AE and my computer. Also recreating a new AI file with different dimensions.
I blocked out the files on my computer in respect to my clients (in case you're confused).

Thanks for your reply, but unfortunately that's not it.
I've tried: having all the assets on separate layers, making sure the doc was in RGB, renaming the illustrator file, saving it back to different versions of AI, loading into a different AE file, and so on. I have a feeling it has something to do with the paint bucket tool. I've outlined/expanded my graphics just incase, so it shouldn't be.
OH HEY! I've seen a lot of your posts on creative cow as well in the last few years. You're kind of like a AE community celebrity to me haha.

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