All apple apps are crashing

Hello everyone! I have a Macbook Pro i purchased at the start of this year. It's been working beautifully. I recently installed Transmit (ftp program). I've noticed since then my macbook is constantly dying. Not sure if it's related to that app or not.
Now if i come back from sleep mode, i can login, and every Apple app will crash. No other app will. So Safari, calendar, mail, messages, app store. All will be crashed. I have to force quit everything and restart the mac. I cannot force quit and reload the app, it will just crash again.
I have done constant backups using our Time Capsule pretty much everyday, and i also have Mountain Lion installed from the App Store.
I'm not sure how to fix this problem, on Macrumours i was told to re-install the operating system. I'm not sure how to go about this, and i'm worried about not having all my information on here.
Any help and advice please? Thanks!

I think i'm just going to go for a fresh start and wipe the whole thing. Is there anyway at all i can do this, and then select items from my timecapsule backup?
For example, certain files from my downloads folder.
Or do i need to do a restore from backup? But that might bring back the errors.....Grrr!
The only importan things i have on my mac are my photo library and my music collection, everything else is not important

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The Exception Type on all that crash: EXC_BAD_ACCESS (SIGBUS) and Exception Codes: KERN_PROTECTION_FAILURE at ...
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I can't view any video media but quicktime works.
Example: iPhoto
Process:         iPhoto [2167]
Path:            /Applications/iPhoto.app/Contents/MacOS/iPhoto
Identifier:      com.apple.iPhoto
Version:         9.1.5 (9.1.5)
Build Info:      iPhotoProject-6150000~1
Code Type:       X86 (Native)
Parent Process: launchd [254]
Date/Time:       2011-09-05 16:25:22.327 -0500
OS Version:      Mac OS X 10.7.1 (11B26)
Report Version: 9
Interval Since Last Report:          734286 sec
Crashes Since Last Report:           427
Per-App Interval Since Last Report: 154207 sec
Per-App Crashes Since Last Report:   2
Anonymous UUID:                      9AD5F8B1-380F-4563-A57D-A589708BA3D2
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x000000009802d0cb
Just about everything crashes.
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My co-worker on an iMac running 10.6.8 today started having an issue where many apps are crashing on startup. They all have this stack trace in Thread 0, the thread that crashed:
0   com.apple.CoreFoundation                0x9505aaa3 CFDictionaryContainsKey + 83
1   com.apple.HIServices                    0x9720cc78 _RegisterApplication + 4761
2   com.apple.HIServices                    0x9720b9b3 GetCurrentProcess + 50
3   com.apple.HIToolbox                     0x96a43e73 GetSystemUIMode + 47
4   com.apple.HIToolbox                     0x96a43e15 IsMenuBarVisible + 41
5   com.apple.AppKit                        0x93693de6 _NSInitializeAppContext + 59
6   com.apple.AppKit                        0x936936a0 -[NSApplication init] + 738
7   com.apple.AppKit                        0x936931d9 +[NSApplication sharedApplication] + 153
8   com.apple.AppKit                        0x936921b1 NSApplicationMain + 358
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Adobe CS4 apps
Office 2008 apps
iPhoto 6.1.8
Graphic Converter 7.2
iMovie 8.0.6
QuickTime Player 7.6.3
LabVIEW 9.0.1
Three different programs I wrote
HP Scan 1.1.1
Remote Desktop Connectrion 1.0.1
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Safari 5.1.7 (although it has errors displaying some web pages including apple.com but not yahoo.com)
Mail 4.6
Screen Sharing 1.1.1
iCal 4.0.4
Preview 5.0.3
QuickTime Player 10.0
System Preferences 7.0
TextEdit 1.6
Dictionary 2.1.3
Terminal 2.1.2
Gimp 2.6
Disk Utility 11.5.2
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OS X Mountain Lion- Reinstall OS X
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