All custom application folders not visible on nwds

Hi,
We are using NWDI and NWDS is used as IDE.
We have created a custom b2b application on NWDS,every step was successfull.
But now we are not able to see all the folders that should be there inside the custom application.
This application is running fine also and when we checked for its content on the j2ee server itself
all the folders were there.
Does anyone have any idea,whats going wrong and what's need to be done.Somebody told me about public/private but I am not clear on that.Is that can be a reason for this problem.How to resolve this.

I copied all the folder manually to NWDS and its working fine now.I dont now the reason why those folders were missing.

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    This application is running fine also and when we checked for its content on the j2ee server itself
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    Does anyone have any idea,whats going wrong and what's need to be done.Somebody told me about public/private but I am not clear on that.Is that can be a reason for this problem.How to resolve this.

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    I think that the public/private not causes to missing the content in NWDS. Probably  some one deployed this content or application directly using the SDM password and they never check in  this component and that's why the application is working fine and the content got deployed but the latest source  is not available in DTR file system. So, When you sync this application form the DTR  the latest you got  is whatever the previous  version you had and which is missing the latest content.
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