Alternate video tracks not visible

I have video files that occasionally display very different content to the primary video content, especially the first time they're played. The video stream with start to disintegrate and for a few seconds something completely different is viewable. It's also not easily repeated. Its not like pristine video content suddenly appears. The main content becomes visually corrupt or fragmented, pixilated, smeared, etc and alternate content becomes visible for brief periods.
What can I do to separate or remove the primary video track enabling the covered tracks to be visible?
I'm viewing these video files with vlc and premiere pro in a Windows 7 environment, but not skilled enough to devise a procedure to expose the underlying content.
Answering questions is not a problem.
Thanks for any suggestions or links to relevant material.

If you are willing to try anything, how about importing the file into AE?
I'm guessing the encoding is corrupt or non-standard since you are seeing the same problem in several programs.
How to get the correct frames? Well, if you are seeing different frames each time you play through it, you may have to do a manual save of each frame and then try to put them in the correct order.
I'd try to open the file in several other video programs and see if it works in any of them. Have you tried Handbrake, for example?

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