Analyze Source Files works not properly

Hello everybody,
I want to deploy a TS sequence with TS 4.0.
The sequence includes both CVI and LabView modules.
The first time I deployed the system (from a TS Workspace file), the "Analyze Source Files" tool identified correctly the VI used by the sequence, and added them to the files to distribute. 
The deployment was successfully generated, and I saved the configuration (.tsd).
Then I modified my sequence adding a VI which wasn't previously used.
When I tried to deploy the system again (with the configuration saved previously), I noticed that the "Analyze Source Files" didn't add the new VI. (Remark: I saved the sequence and the workspace before start the deployment tool)
Is there something wrong in my LabView Options settings? (I didn't modify the default settings).
Note:
The VIs mentioned are from an agilent driver library downloaded by NI site.
Any help would be appreciated
Thank you
Baloss

Hi Johann,
thank you for your suggestions. Sorry for my late answer but I take some sunny week holidays...
Meanwhile my collegue (working on the same project) has decided to replace the VI agilent driver with the corresponding CVI code.
Now everything works fine, but of course the TS only call CVI modules.
About new installation: we worked with the same PC, deinstalling the code with Windows tools ("Control Panel"-> "Add or Remove SW")
Thank you
baloss

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    [exec] CLASSPATH=C:\oracle\MIDDLE~1.5\patch_wls1035\profiles\default\sys_manifest_classpath\weblogic_patch.jar;C:\oracle\MIDDLE~1.5\patch_jdev1111\profiles\default\sys_manifest_classpath\weblogic_patch.jar;C:\oracle\MIDDLE~1.5\JDK160~1\lib\tools.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\weblogic_sp.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\weblogic.jar;C:\oracle\MIDDLE~1.5\modules\features\weblogic.server.modules_10.3.5.0.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\webservices.jar;C:\oracle\MIDDLE~1.5\modules\ORGAPA~1.1/lib/ant-all.jar;C:\oracle\MIDDLE~1.5\modules\NETSFA~1.0_1/lib/ant-contrib.jar;.;%JAVA_HOME\jre\lib;C:\Apache\apache-cxf\lib;C:\Apache\apache-cxf\lib\cxf-manifest.jar;.\build\classes;C:\Program Files\Java\jre6\lib\ext\QTJava.zip;C:\oracle\MIDDLE~1.5\ORACLE~1/modules/oracle.jrf_11.1.1/jrf-wlstman.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\ADF-SH~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\ADFSCR~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\mdswlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\AUDITW~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\IGFWLS~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\jps-wlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\jrf-wlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OAMAP_~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OAMAUT~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\ossoiap.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OSSOIA~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OVDWLS~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\SSLCON~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\wsm-wlst.jar
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    [exec] PATH=C:\oracle\MIDDLE~1.5\patch_wls1035\profiles\default\native;C:\oracle\MIDDLE~1.5\patch_jdev1111\profiles\default\native;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\native\win\32;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\bin;C:\oracle\MIDDLE~1.5\modules\ORGAPA~1.1\bin;C:\oracle\MIDDLE~1.5\JDK160~1\jre\bin;C:\oracle\MIDDLE~1.5\JDK160~1\bin;C:\Program Files\PHP52\;C:\Program Files\Common Files\OTG;C:\oracle\product\10.2.0\client_1\bin;C:\oracle\ora_adi\bin;C:\PROGRA~1\REFLEC~1;C:\Program Files\Reflection;C:\Program Files\Oracle\jre\1.1.8\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;E:\MSSQL7\BINN;C:\Program Files\ATI Technologies\ATI.ACE\Core-Static;C:\Program Files\Common Files\Roxio Shared\DLLShared\;C:\Program Files\ATI Technologies\ATI.ACE\;C:\Program Files\Microsoft SQL Server\80\Tools\BINN;C:\Program Files\Microsoft SQL Server\80\Tools\Binn\;C:\Program Files\Microsoft SQL Server\90\Tools\binn\;C:\WINDOWS\system32\WindowsPowerShell\v1.0;C:\glassfish3\jdk\bin;C:\Program Files\TortoiseSVN\bin;C:\Program Files\Vim\vim73;c:\apache\ant\bin;c:\jboss\bin;C:\Apache\apache-cxf\bin;C:\glassfish\bin;C:\Program Files\QuickTime\QTSystem\;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\native\win\32\oci920_8
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    [exec] Your environment has been set.
    [exec]
    [exec] CLASSPATH=C:\oracle\MIDDLE~1.5\patch_wls1035\profiles\default\sys_manifest_classpath\weblogic_patch.jar;C:\oracle\MIDDLE~1.5\patch_jdev1111\profiles\default\sys_manifest_classpath\weblogic_patch.jar;C:\oracle\MIDDLE~1.5\JDK160~1\lib\tools.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\weblogic_sp.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\weblogic.jar;C:\oracle\MIDDLE~1.5\modules\features\weblogic.server.modules_10.3.5.0.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\server\lib\webservices.jar;C:\oracle\MIDDLE~1.5\modules\ORGAPA~1.1/lib/ant-all.jar;C:\oracle\MIDDLE~1.5\modules\NETSFA~1.0_1/lib/ant-contrib.jar;.;%JAVA_HOME\jre\lib;C:\Apache\apache-cxf\lib;C:\Apache\apache-cxf\lib\cxf-manifest.jar;.\build\classes;C:\Program Files\Java\jre6\lib\ext\QTJava.zip;C:\oracle\MIDDLE~1.5\ORACLE~1/modules/oracle.jrf_11.1.1/jrf-wlstman.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\ADF-SH~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\ADFSCR~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\lib\mdswlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\AUDITW~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\IGFWLS~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\jps-wlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\jrf-wlst.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OAMAP_~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OAMAUT~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\ossoiap.jar;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OSSOIA~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\OVDWLS~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\SSLCON~1.JAR;C:\oracle\MIDDLE~1.5\ORACLE~1\common\wlst\RESOUR~1\wsm-wlst.jar;C:\oracle\MIDDLE~1.5\utils\config\10.3\config-launch.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\common\derby\lib\derbynet.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\common\derby\lib\derbyclient.jar;C:\oracle\MIDDLE~1.5\WLSERV~1.3\common\derby\lib\derbytools.jar;;
    [exec]
    [exec] Initializing WebLogic Scripting Tool (WLST) ...
    [exec]
    [exec] Welcome to WebLogic Server Administration Scripting Shell
    [exec]
    [exec] Type help() for help on available commands
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    [exec]
    [exec] Redeploy of Spaces Application started at Wed Mar 28 12:25:21 2012
    [exec]
    [exec] Connecting to t3://claptd01:7001 with userid weblogic ...
    [exec] Successfully connected to Admin Server 'AdminServer' that belongs to domain 'base_domain'.
    [exec]
    [exec] Warning: An insecure protocol was used to connect to the
    [exec] server. To ensure on-the-wire security, the SSL port or
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    [exec]
    [exec] Redeploying application webcenter ...
    [exec] <Mar 28, 2012 12:25:28 PM EDT> <Info> <J2EE Deployment SPI> <BEA-260121> <Initiating redeploy operation for application, webcenter#11.1.1.4.0 [archive: null], to WC_Spaces .>
    [exec] [Deployer:149140]The task cannot be processed further until the current edit session is activated. When this occurs, task processing will continue. The user can exit the deployer tool without affecting the task.
    [exec] ..........................................Failed to redeploy the application with status failed
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    [exec] No stack trace available.
    [exec] None
    [exec] #########################################################
    [exec] ##### ReDeploy Spaces Failed #########
    [exec] ##### Contact support with Exception Stack #########
    [exec] #########################################################
    [exec]
    [exec]
    [exec] Exiting WebLogic Scripting Tool.
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    [exec] <Mar 28, 2012 12:27:34 PM EDT> <Warning> <JNDI> <BEA-050001> <WLContext.close() was called in a different thread than the one in which it was created.>
    BUILD SUCCESSFUL
    Total time: 2 minutes 31 seconds
    Edited by: 891549 on Mar 29, 2012 12:01 PM

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