Animated GIF Export issues

I have a simple Flash animation which I'd like to be made
into a transparent GIF.
When I do the GIF export, only the first frame of my
movieclips (which are placed in the main timeline) get rendered. It
seems like Flash only records the main timeline preview output into
the GIF file, and does not play movieclip objects. You would expect
the GIF recording to be of the same preview as when you hit
ctrl+enter (essentially final playback).
Because of this, the GIF export is pointless. The only way to
use it is to have all your animations occur in the main timeline,
and not within movieclips. It doesn't work for me (and for most
people?), because I need to easily scale my animations, which is
doable by just resizing a movieclip.
Is there a way around this in Flash? Am I missing something?
I've had to use a 3rd-party tool (Magic SWF2GIF) to do the
GIF recording.
My other issue is Flash cannot export transparent GIF's it
seems. Because of this, I have to rely on more 3rd-party GIF tools,
most of which are rubbish.
In the end, I've had to take snap shots of every individual
frame and edit each frame as individual files in Photoshop to do
all the cropping and transparency just right. Real pain when you
are talking 50 frames, and having to do multiple animations.
Is there a way to export transparent GIF's in Flash?
Seems kind of dumb that I have all this high-end software and
loads of tools... and I still have to edit things frame by
frame.

Thank you for your reply!
I check exported GIFs in various browsers and XnView viewer.
It's definitely not a preview  issue - i have 32Gb of RAM and Nvidia Quadro 4000 GPU on my system.
I believe the issue is with transparency, because i'm able to export GIFs with solid background just fine
GIF export dialogue window has 'Transparency' checkbox, so it looks like it should be possible to export an animated GIF with transparent background, but for some reason i'm getting all frames at the same time
thank you

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