Annoying problem: Trying to get rid of any frame containing these constant-grey artifact rectangles.

Hello.
I have recorded my screen in crisp 60 FPS as I walk around in a "Google Street View"-like service (where you see streets as photos from a first-person view). Each time I "walk" in this virtual world they have created, there is a brief frame in between the two clear images that has big artifacts in the form of grey boxes. Luckily, this seems to be the same constant exact color at all times. This makes me think that this can be fixed somehow, easily.
The artifacted frames look like this: http://i.imgur.com/7yYpDrn.png
Now, I'm asking you video experts if you can think of a sane way by which I can either simply remove any such frame from my video (perhaps by looking for the existence of a small image that's just a 32x32 px grey box), or to paint any such frame's grey pixels with the pixels of the last frame, or the next frame. Either of those solutions would solve my problem. Whatever is more realistic is fine with me. Point is: I want to get rid of those ugly grey boxes/artifacts!
Please note that these are NOT artifacts caused by the video capture (which is unbelievably crisp and perfect!), but rather the in-browser JavaScript application having this bug and there is nothing that can be done about that.
I'd be very happy to get this solved, because the end result will be amazing as I speed it up and there are no ugly grey rectangles making you dizzy.
(The blue and orange circles are not a problem, but rather indicators of where you can go.)

Ann is the most helpful person here - I would be nice to her ;-)
Not clear from the post - are you saying that the gray boxes appear "every other frame"? If they are "once in a while", then I would just cut them, but I understand if they are constant that you need an automated method then to address this.
If every other frame, try putting the 60p footage into a 30p sequence, which will play half the frames, which could therefore eliminate the bad frames? If that doesn't work initially, then trim 1 frame from beginning. Just a guess...could work.
Good luck
Jeff

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