Another case of "missing" iTunes songs, internal drive, iTunes 8 & 9

I have searched the forums for several hours, pouring over post after post on this subject, but have not seen an answer or workable solution to this exact problem.
I have been using iTunes since version 1, and have a little over 14,000 songs in my library, on my boot drive, mostly ones I have ripped from my own CDs. All of a sudden, maybe 3-4 months ago, starting in version 8, now version 9, on certain songs I am repeatedly getting the exclamation point & the message: "The song ____ could not be used because the original file could not be found. Would you like to locate it?". I can manually point iTunes to the song, all of which reside on my boot drive in the iTunes Music folder, but often the songs seem to "disappear" from iTunes again later on. This is a tedious process, although usually there are multiple songs on the same album. Right now I have about 100 "missing" songs. I doubt I have moved or changed folder names for more than a few, if any of them.
Many, but not all of the affected songs have a period in the song/group/album names, such as R.E.M., Mr. Tambourine Man, or Charlatans U.K. while others may have a colon (:), a dash , a number (1), or ampersand (&). All these songs were able to be found under earlier versions of iTunes, but something changed in later versions of 8 & now 9, or elsewhere.
Is there a way to permanently fix this issue, without having to reimport all my songs? I have many, many years worth of iTunes playlists, albums, playlist for my iPod, etc. so any "solution" that means I loose all this work is a non-starter.
Thanks!

Another point - after the mass Import, the song names displayed in iTunes are the same as the contents of my new library location excepting there are duplicates and the the tracks are "unlocateable" for playing.

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