Aperture 3.4.3: Referenced images lost in time machine restore but previews remain

Dear Aperture Community,
I recently purchased a new iMac and used a time machine backup of my old iMac to move my files over to the new Mac. All seemed to work well, and I have been using my new iMac happily for a couple of weeks.
I have Aperture 3.4.3 with about 40,000 photos in my database.
However, I just noticed that a small handful of semi-recent photos (~100) have a badge showing that "The referenced image’s master has not been found" (the yellow triangle arrow badge). I tried "Locate Reference Files" for all photos to redirect to the new hard drive name, but that failed to locate the ~100 missing images. I tried to inspect the Aperture library by Control-clicking on the Aperture library and choosing Show Package Contents - indeed the ~100 images were not there, but the ~40k other images were.
I can imagine that this issue may or may not be due to Time Machine, but I certainly never deleted any images. I always import my photos directly into Aperture.
How can my thumbnails and high resolution previews of the 100 images still be visible in Aperture, and yet the masters be lost?
I'd like to recover the images. Worst case, I will use Grab to capture the previews, which are of course much lower resolution than the originals, but at least I'll have something...
Thanks for your help!

thanks for the reply Frank:
Masters.  I do not know.  I left it as the default.  I assume that means managed?
Error message was the LONG error code with the jist of it being related to what sounds like a PLUGIN error. I don't have the EXACT coding right now as I am not home.  I've googled the code +/- other stuff on it and according to discussions here and elsewhere (albeit all archived), it looks like it was related to my plugins. 
as far as the restore is concerned, I am POSITIVE that the restored library was the NEW library not the original.  But keep in mind, Time Machine only lets me restore the backup to the exact place where the file was before.  I am just worried that somehow Time Machine backup hosed my Aperture library somewhere along the way.  This is why I was wondering if there is something else I need to restore with my time machine backup besides the library file/database itself?
Thanks for the quick reply.

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