Aperture 3.4.5 loading "erased" images

When I insert my Lexar CF 8GB card into the Samdisk reader, Aperture 3.4.5 will load some of the images that I just erased (formatted the camera) from my Nikon D200. I see one or two of the new photos, but that's it. When I try to load into the new version of iPhoto (9.5.1) NONE of the old photos appear, and ALL of the new photos appear just fine. What can I do to fix Aperture? Thanks.
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I tried Andy's suggestion before I read your reply. Tried importing with new images after "erase all" and reformatting the card. This time the import reads 5 of the old photos and none of the new. iPhoto reads all of the new and none of the old. Thanks for the help. I'm open to other suggestions. BTW, Aperture has always imported my new photos (until today), but I did notice that it has, in the past, occasionally read a few old photos that I had deleted, using the "Format" command on the D200. I don't have any presets that would exclude any images. It's exactly as it has been for the last year.
I tried it with two other CF cards. Here's a summary:
!st try: Aperture read a few old and some of the new images from both cards; iPhoto read all NEW images on both cards and NO old images.
2nd try: Aperture read ALL new images on both cards and NO old images. Same for iPhoto.
3rd try: Same for both Aperture and iPhoto
4th try: Same for both Aperture and iPhoto
I thought I had worked through the Aperture glitch, but then I tried inserting the 8GB card (the one with the original troubles). Aperture brought up 5 images FROM ONE OF THE OTHER CARDS! And NONE of the new images. iPhoto (and the Finder) see ONLY new images on this 8GB card. Any ideas?

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This was what the image looked like after it had loaded:
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As I don’t know much about the technical aspects of computers, I don’t really understand the first answer, and it sounds like following it might produce unwanted changes.
But I understand your questions, so I’ll try to answer them;
"loading from any Project" means that I encounter the problem when I’m using a project, possibly after/because I’ve left the Mac on overnight, and/or I’ve made a lot of adjustments, and, once the problem is there, it happens in any other project which I open – the images load then disappear.
I can see images in the Browser, so it only happens in the Viewer(s).
I’m afraid I don’t understand what you mean by: “If you select "Photos" from near the top of the Library tab of the Inspector, does it show you all of your Images?”. I am a newcomer to Aperture, so I don’t know what some of the buttons are for yet, but when I want to look at and adjust my pictures, I import them, as referenced images, then Aperture creates a folder/project in the Library. When I click on that Project (when it’s working properly), all the images appear in the Browser or the Viewers – without me needing to “select Photos from near the top of the Library tab of the Inspector”. I selected it and looked at all the items in the dropdown menu, but none of them seems to offer the option to ‘show all the images’. So I’m not sure how to answer your question except to say that – yes, I can see all the pictures in the Browser or the Viewers (when it’s working properly), but I don’t seem to need to use the Photos button to achieve this.
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Hard Drive capacity 499.25 GB
Available 387.36 GB
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I hope this helps you to understand more.
Thank you for trying to help me.
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