Aperture cannot find referenced RAW files

RAW files imported to my local hard drive since installing Leopard cannot be found by Aperture. They are there, I can get a full resolution view, but I cannot make any edits as Aperture complains that the file is "offline". I cannot delete the photo for the same reason. It suggests I connect my internal hard drive and try again.
I have found that by using the reference manager, I can reconnect the file to its original (even though Aperture says it finds it in the manager); after this, I can edit it. However, I cannot seem to do this en masse, and must do it one file at a time. Obviously a tedious step I didn't expect would be required by $300+ software.
I have all latest software updates.

Also, it only does this with RAW files; not JPEGs.

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