Aperture doesn't read raw files

Aperture just stopped reading raw files. NOt all of them, just some. It says unsupported file format. Why is this happening, what can I do about it?

Aperture 2.0.1, camera Canon EOD 400D, OS 10.5.2.
The problem is it didn't happen before, it started happening today after I changed places of many files, exported the biggest part to the external drive and created new projects leaving some photos there and changing places. I don't know what I did wrong. It can't read only some files.
Same thing happened with Iphoto as well some time ago.

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