Aperture issue on iMovie download?

I have already got latest version of Aperture installed. Have just downloaded iMovie and it appears to have started a complete reinstall of Aperture. If I let it run will it overwrite my existing install and mean I lose all my images etc? Or is this normal?

I shot 3 videos on my iPhone 4. I simply want to edit them together in iMovie for iPhone. After I exported them (in 720P) it showed up in the camera roll as a small square picture surrounded by lots of black space.
In fact, after transferring them to my computer I noticed comparing to the original that top and bottom of video was cut off!
Anybody have a clue why that is happening?
Doesn't seem to matter which resolution export I pick. They are all reduced in size and cut off.
Thanks,
Todd

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