App Launching Unresponsive After Upgrading to Snow Leopard

For reasons I do not quite understand, launching any app, and doing many things within them (basically, instantiating any process) is extremely slow after upgrading to Snow Leopard. For instance, opening a new window in Terminal takes a full 22 seconds (I've timed it) to go from "login" to the zsh prompt. Before, it was instantaneous. There is nearly nothing installed on this computer other than the bare essentials and some documents.
This is obviously very frustrating and detrimental to my productivity. Here is what I've tried:
- Reinstalling from scratch (I've now tried this two times). First, I backed up my home directory with SuperDuper and manually copied everything over. Everything was fixed, for about two days, and then it started doing the same thing again. Then, I cloned the entire disk with SuperDuper and restored from it. Again, everything was fixed for a little while and then I had the same problem again.
- Most recently, I tried "Verify disk" in Disk Utility. This returned that there were errors (an "invalid directory count"). Therefore I rebooted into the installation disc and ran "Repair Disk", which outputted that the disk was repaired successfully. However, I rebooted back and now have the same problem.
Does anyone have any suggestions as to what is going wrong? My first thought was that perhaps the hard drive is failing, but I've dual-booted Linux on another partition and it works fine.
I am very confused. How can I fix this?

Have you updated iTunes?

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