App Store Updates not showing

I'm having a problem with the App Store not showing me updates that are available.  I noticed this just now when using iPhoto, it told me there was an update but the App Store said that no updates were available.
I fixed that by downloading the update from Apple's support site.  But then I got worried if I'd missed anything else.  My normal account doesn't have admin rights, so I logged in with one that does and then there are some updates waiting, including some security fixes.
So is this by design?  If I check for Software Updates as a user without admin rights should nothing appear?  Or do I need to change a setting somewhere.
I'm on Mountain Lion 10.8.3.
Thanks in advance for any help.

babowa wrote:
Well, I'm not sure if this would be the case here, but if you have the "automatically check for updates" checked in SU Pref Pane as well as the subcategories, it will automatically download and install updates (I'm guessing that this would mean there wouldn't be a notification since it is being installed "behind the scenes" as it were).
And, the Pref Pane now has this at the top "SU keeps OS X and apps from MAS up to date" - that also indicates (to me) that it'll all be done automatically. So this may be Apple's planned and intentional behavior?
My initial post here was to show that although my apps were not purchased from MAS, I am still able to download updates from MAS. On the other hand, I do not know if there is a difference in notification and/or download methods on MAS vs. Non-MAS apps (despite what the SU Pref Pane header states).
That is exactly what happened.  Just got off the phone w/AC.  They directed me to SU Pref Pane.  Missing Manual nor the OS Help Menu makes no mention of SU Pref Pane!  Anywho, I changed the settings.  So hopefully, I should be able to start getting notifications of all updates.  The box I kept enabled was the Automatically check for updates.  I unchecked all the rest of them. 
Hopefully, this will help the OP too. 

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