App Store updates repeating

I'm experiencing an issue where the App Store shows updates available for programs repeatedly, even if they just received the update that is available. These aren't new updates, it is running the update for the same version, over and over.
For example:
I run the updates, and iMovie receives an update to v 10.0.3.
Afterwards I check the version of the program on the disk, and it is 10.0.3.
The following day, I receive the notification that "Application updates are available" including the same update for iMovie, 10.0.3.
I can run the updates repeatedly, one-after-the-other, and it will endlessly continue to download and install the same versions. Clearly the App Store isn't correctly checking that the programs on the disk match the version of the available updates.
Currently, this seems to only occur with Apple's programs (iMovie, Pages, Keynote, Numbers, GarageBand) but also Evernote. I have other programs installed via the App Store which don't have this problem. Also OS system updates do correctly install only once.
I'm on Mavericks, OS X 10.9.2, MacBook Air 1.7 GHz i7.
Any ideas how to solve this problem? My guess is there is a local cache file that determines which program versions are installed, and this file is corrupt or has incorrect permissions. I wonder if my disabling Spotlight has caused this.
Thanks,
Quinn

I have this problem and it is not consistant. Some updates keep asking to be repeated and others perform normally.
In my case the cure is to boot the Mac into "Safe Boot" by holding down the shift key when turning on until the Apple logo appears, then release it. Be patient as safe boot can take a while. Select yourself as the "user".
When settled go into the App store and the items requiring update go away.
Now restart the Mac normally.
All repeated updates have gone away.
In my case this has cured the problem for a while until more updates come along but not all cause the problem.
I know this is not a complete cure but it helps me.
I have been in contact with Apple (under my Apple care) several times but they have not been able to solve it.

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