Apple Mail - all mail in Junk Mail is categorized as "not junk"

My Junk Mail stopped working properly on Christmas Eve. The problems that are occurring since then are:
1. Most junk mail is correctly sent to the Junk Mail folder, but so too are some (about one in ten) e-mails that are not junk. Those one in ten are already classified as "Not Junk" so I can't help the system to learn by reclassifying them as junk
2. All e-mails in the Junk Mail folder have the standard blue ball icon and none have the junk mail icon
3. All the e-mails in the Junk Mail folder are classified as "Not Junk"
4. When I reclassify the items in the junk mail folder as junk, the blue ball icon does not change to the junk mail icon.
Are these four separate problems or part of one problem?
Any help with one or all of them would be much appreciated.
Keith

What I'm saying is that originally Junk Mail that I received went directly into the Junk Mail Folder.
Now all previously marked Junk Mail comes and stays in my In Box.
Nothing is going to the Junk Mail folder on it's own like it did a few days agao.
I'm not using anything except Thunderbird.

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