Apple Mail has gone completely screwy since Mavericks upgrade

Hi everyone...
I truly feel like crying. I upgraded to Mavericks on both my main desktop and also my laptop and it seems that all of my mail on both the Desktop and the laptop has gone completely topsy turvy in Apple Mail. It seems like a lot of my messages are being routed in a completely different way! And most of them are simply disappearing to goodness knows where!
Why on earth when I send a message to my home email address at **@att.net does it land up in my Gmail Archived folder under one of Gmail's All Mail folders (for one of my Gmail accounts) even tho' I did NOT send to a Gmail account?
So many strange things are happening! And most of them are concering this "Archive" folder for Gmail.....SO MANY of my emails are being dumped into those Gmail ALL Mail folders when they were not even addressed to a Gmail account!! This is happening on both my laptop AND my main desktop...so I know that it is not just on one of the stations.
Also, I have been getting notifications on my phone of LOTS of messages that have been sent my way but they are not appearing in my mail app...and when I search for them I cannot find them...as if these messages have just vanished!
I cannot have this happen because I am now missing out on all of my work emails!
I have been sending a bunch of test messages to my **@chgraphicdesigns.com.account and I will see the message pop into the INBOX for just a second and then suddenly disappear. I am not able to find these test messages by doing a search for them either. What has happened to them?? I am now missing a TON of work emails I received earlier today...I had seen notification of them popping in throughout the day but was going to attend to them later due to a huge project I was working on...but now those emails are nowehere to be found!
I turned off Mail and tried out Thunderbird and that is working PERFECTLY, so it is just Apple Mail that is having all of these issues. This is just awful:(( It is so messed up I literally want to cry. Can anyone offer any suggestions?
Thank you so much for your help in advance:)

I have managed to restore many of my emails from Time Machine, manually re-created many of my original mailboxes and re-populated them with the restored mail messages but after doing so I discovered another bug with the latest version of the Mavericks/Mail combo.  The bug that I am experiencing is that some of the emails in my folders are "invisible" when I open the folder and can only be located using a spotlight search within that mailbox for a term that occurs within the "invisible" email, at which time the previously "invisible" email is viewable but only in the results that the Spotlight search brought up.  When I close the Spotlight results, the email goes back to being "invisible" again in the mailbox from which it is identified as having come from.  I know that Spotlight ios not pulling it from some other mailbox that I might have accidentally placed it in, as Spotlight's search results indicate which mailbox the message was found in.  I never would have discovered this bug if it weren't for the fact that I was trying to locate a message that I knew to exist because I had previously printed a hard copy.  The date shown on my hard copy was non-existent on any messages in the mailbox unless I did a spotlight search for unique phrases in it, at which time it showed up.  Has anyone else noticed this problem happening to them?

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