Application does not show up in "install applications list"

I am having an odd problem with my SCCM 2012 OSD tasks. It appears that not all applications are showing up in the "install applications" task. For instance, I have separate applications for 32-bit and 64-bit Java. The 64-bit application shows
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box selected. (It also looks like that box does nothing, I have it unchecked for Acrobat Pro and it still shows up in the list).
Both deployments are working outside of the OSD stuff, but I'd like to be able to have them install as part of an OS deployment. Any ideas?

Had the same, (i am on 2012 R2 by the way)
packages could be selected, Applications couldn't from a TS.
Create an application with only one deployment type of type " msi" and you'll see that this one will show up!
Everything said here (set the flag, install weather or not...) is true
my issue was: If theapplication is of type "script" it will not show in the application list. unless ALL of your deployment types (user and/or device types) in your application, have these things set!
(i sctually needed "install for system if resource is device, otherwise install for user" )
AND in my application i have to unset the "Allow this application to be installed ..." flag for them to show up in the TS
AND run the scripts as 32bit on 64bit computers
AGAIN: only seeing this behaviour in SCRIPT application types, not MSI typed once...
I see no mention of this anywhere in any documenttaion out there.....
hope to have helped out someone...
joeltje

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