Application link has vanished from left menu bar (used to be under Podcasts

Hi,
I opened iTunes last night to synch my iPhone and it acted very oddly. iTunes installed a bunch of songs I had throw in the recycling bin and re-imported a bunch of album artwork. Small problems that I quickly resolved.
iTunes also gave me a weird message about applications (I didn't realize it was a big deal so I didn't read it, something about saving over new applications with older applications) so I said no.
The big issue - my applications link is now missing from the left menu screen (it used to be below the Podcasts link). I don't know how to update any applications or manage my applications without that link.
Help!
Thanks in advance.

iTunes prefs -> General.
Under Show: tick Applications.

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