Applications disappeared after iTunes reinstall

I just re-installed iTunes on a new computer. Everything in iTunes appears complete, as before, but when I connected my iPhone, all my applications were erased. They all show in iTunes under "Library - Applications", but not on the phone. How can I restore them?

Make sure there is a check for syncing in the Applications tab.
Also you can try reauthorizing your computer.
In iTunes, go to the Store menu
Select "Deauthorize Computer"
Enter your Apple ID and password then click the Deauthorize button
Go back to the Store menu
Select "Authorize Computer"
Enter your Apple ID and password then click the Authorize button.
These articles will explain more:
http://support.apple.com/kb/HT1977
http://support.apple.com/kb/HT1420

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