Applications not showing up after recent 10.6.4 update

I have a Mac Book Pro (Model A1151) from 2006 that I was running an early version of Tiger on when it began giving me problems last week. At that point, I reinstalled my original software that came with the computer and that did not help. After that, I purchased 10.6.4 and my applications worked for awhile then they stopped working again.
This is very odd and I am at a loss for what may be causing this.
The applications that are no longer showing up are:
Parellels (5)
iTunes
Firefox
Quicktime
Keynote
Numbers
Pages
Any input and/or ideas of what may be causing this issue would be greatly appreciated.

Click once on every application and select Get Info from the file menu.
Then compare with the versions on these links:
http://download.cnet.com/mac/1950-20_4-0.html?filter=os%3D142%7C&filterName=os%3 DMacOS+X+10.6Intel%7C
http://snowleopard.wikidot.com/
http://www.macintouch.com/specialreports/snowleopard/slcompat.html
In addition to the third party links if you can find them. If any are not matching with 10.6.4 exactly, you might want to contact the vendor to ask if it is 10.6.4 compatible or not. Also make sure all the applications in question are in the Applications folder. If you are launching them from the Dock, the translucent bar, click once until you can select Show in Finder. If any of the said applications are outside of the Applications folder on the boot hard drive, it may be you are launching the wrong version. Anything in the Finder window's left sidebar is also a shortcut.

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