Applying window dub filter across multiple clips

I know how to apply the window dub filter to a single clip--but suppose I want to apply it across clips? Is it possible? In the past I've rendered one single Quicktime file of the entire project, re-imported it, and made the window dub from that. In this case I will have two hour-long captures, and I'd really prefer to avoid having to make a temporary two-hour-long Quicktime file just to make a window dub. Surely there is some way to "join" the separate clips on the timeline so that the window dub filter continues straight through to the end of the project...?
Thanks,
Steve S.

Gah...I completely misread the post. Bonehead.
Thanks for covering Kyle...great suggestion. I was just in NY...great city.
Shane

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