Apps are restarting when they were closed prior to shutdown.

I am running an iMac 13.1.  The system is super fast - especially after installing Mavericks.  My issue is  related to startup when apps are automatically start up even though I closed them prior to shutdown and I have unchecked the box that will restart open apps in the shutdown window.
If I wait 15 to 20 seconds after closing all apps prior to shutdown I have no issue when I restart my iMac.  But it seems like the queue that keeps track of apps that are/were running is not being flushed completely if I shutdown my computer with a few seconds after closing the last app.  Not saying that this a big issue but it does seem like there is a delay in clearing  the app queue on faster Macs.
Anyone have a solution to this problem?

Why don't you explain what happens when you try to delete these two apps that are showing that they need updates. You can only delete them if they are actually installEd on the iPad. Are they on the device?

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