Apps not showing in apps list in iTunes

Since the new iTunes when I plug in any iOS device none of my apps show in the left hand column - where you can specify by size, name etc. The right hand side that shows a mock uo of the iOS screen where you can move apps around etc is fine an all apps are there - but nothing on the left - what am I missing?
Thanks

sounds like the apps were not saved in your itunes library. did you transfer purchases?
http://support.apple.com/kb/HT1848

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