Apps not transferred in updates

Please help!  This is not the first time this has happened.  I have just updated my iphone and it has deleted all the apps I purchased at the apps store.  Just doesn't acknowledge they existed  - yes, I want to stress they were purchased from the itunes apps store.  Anyone else had this problem?

WELCOME!http://i29.tinypic.com/2ef7yfn.gif!
Try running +repair disk+ from your *software install DVD* and afterwards, run +repair permissions+ *from your HD.*

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