Apps won't sync with iTunes 12.1.2

(iMac with OS X 10.10.3, iTunes 12.1.2.27; iPhone with iOS 8.3)
After upgrading to OS X 10.10.3, all the apps in my iTunes library were gone (music was still there). I transferred the apps on my iPhone back to the library, and downloaded the rest of the previously purchased apps from the App Store.
I then updated the apps in the library. In the iTunes App panel for the phone, those apps are now marked "Update". But when I sync the iPhone, the updated apps do not transfer to the phone.
Rebooted both computer and phone, no effect. Any ideas?

Ditto. Even the new 2.0.1 firmware made no difference. I've had no luck with iTunes in this dept at all. I can download apps to the phone, but they won't sync back to iTunes. If I download apps to iTunes, not only will they not transfer to the phone, but all the apps on the phone get wiped w/o warning.
I've tried the following per Apple suggestions, but to no avail:
- Reset iPhone (the home and lock button method)
- Remove (I manually deleted all content little by little)
- Reset Settings (done thru software, don't know how this differs from "reset iPhone" above)
- Restore - a Huge pain in the *** for nothing. Took forever and obviously I then had to manually put all my songs, ringtones, contacts and photos back on it.
What else is there left to try?

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