Apps wont start with lion

Hi
Can anyone help?  Ever since I have installed Mountain Lion my Mini Mac starts up with a black screen and it runs through a set of diagnostics, I then have to type in the root mode EXIT for the mac to start up. Not only that it states that it has cleard a whole load of abundant files and then I can continue.
Second problem, I cant get hardly any of the Apps to start up...Like Pages, Numbers itunes does sometimes.
My Mac is at an abundant state...Help!
Vic

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