Appstore updates - do they replace the entire bundle or not?

Looking through the developer program documentation, I was trying to figure out whether or not an update submitted to the appstore will COMPLETELY replace the bundle on the users device, or just the updated binary/files contained within?
I was also wondering if the Documents directory gets erased in this process too? This would be somewhat annoying if it were the case, i.e. a user would probably want to keep his highscores/savestates/profiles/whatever through an update of a given app.

The entire bundle appears to be replaced.
The Documents directory is supposed to be retained between updates, however there are a number of reports of this being erased as well "sometimes". While I believe this last case to happen less on 2.0.2, it happened quite frequently on prior versions.
rob.

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