Are actual music files altered with itunes upgrade?

Does upgrading itunes to 6.0.3 from 4.7 change the music files in the library? I want to eliminate a bunch of podcasts from my backup copy. It was made when itunes was 4.7. I know the iTunes 4 Music Library data file was updated - but are the music files the same?
here's what I'm thinking of doing. Erase all the iTunes music > [selected podcast folders] then finder copying the current crop of podcasts folders.
Does anyone see any potential problems like the podcasts won't play if I downgrade to 6.0.1 or 4.7?

I can't answer regarding podcasts and downgrading, but I know that some of the earliest songs that I've purchased still show FairPlay version 1. As far as any of the other data involved, I'm betting that the song files themselves aren't modified, but your iTunes xml file is.

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