Audio and Video out of Sync after Pro Res export

I´m getting an audio/video sync issue when I´m exporting to Pro Res.
I started off in a HDV1080i50 sequence. Audio sampling rate is 48khz. (16 bit depth)
The sequence is less than 20 minutes long. It plays correctly on the timeline.
When I export the sequence for DVD and view it on a set top it plays absolutely fine.
When I export the video to ProRes (422 HQ - I used Export using Quicktime Conversion) and the audio to AIFF, they quickly go out of sync. This was brought to my attention first by the guys who were making the DigiBeta master, and when I view the exported material in a Pro Res sequence I can see it for myself.
The audio and video clips are of the exact same duration.
Possible issues...
Some of the narration was recorded at 44.1 khz. I didn´t resample it (I´m still a learning novice..).. but if that is the issue should it not have affected the DVD as well? All the other audio in the project is 48khz.
Most of the material is HDV1080i50..but one clip used was originally an NTSC clip and therefore a different frame rate. However I converted it to a 25fps clip and this is reflected in the vid rate column in the browser where it says 25fps.
Final point, the exported AIFF files..when I import them back into the HDV1080i50 sequence and play back, it is perfectly in sync.
Any help would be greatly appreciated.

First, yes resample the narration to 48k 16 bit.  You will probably be able to reconnect to the resampled files.  Usually works for me.   That's a simple fix and will probably solve the problem.  If it doesn't, you can try to change the codec (compressor) in the sequence settings to prores 422HQ, fully render and see if that solves the problem.
Wait, just reread your original post.  Export from fcp using file:  export:  quicktime movie NOT quicktime conversion with current settings.  If that works without synch issues, use compressor to convert to prores.

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