Audio failure on converting AVI to Mov files using quicktime pro

I have used quicktime pro for some time to convert avi files to mov files etc for importing into itunes and ipod. However this week all of a sudden the audio fails on exactly 3 minutes and 28 seconds, and does not pick up again. I have not installed anything during that period which would cause this and i'm totally lost.

Do you have Perian from http://perian.org/
You should read this support page http://perian.org/#support in case you need to delete older codecs.

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