Audio pops when cutting soundfile in the edit window

Hello I am experiencing some strange behavior when I use the scissor tool to cut audio in the edit window.
At the moment I do this my speakers go "POP" which is really strange and kind of annoying.
Has this been happening to anyone else? Is there a fix for this?
Any advice is greatly appreciated. 
Thanks very much in advance.
-B

Really?  Wow, that seems to be a pertty serious issue. 
Never did that in ProTools.  Help me Apple! 
As a recent swticher from PT I want to like this application!
-B

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