Audio shorter in timeline

Good Day all
When I Import an asset into encore and insert into timeline the audio is shorter than the video. I Exported in PPro cs6 using the preset mpeg dvd ,with multiplexer set to dvd, which only gives me one mpeg file.
If I delete the .xmpses and .xmp files of the exported mpeg file before importing into encore it rewrites the files correctly
Is there a way to fix this?

I've seen this same issue on the forum a couple of times in recent weeks. Some kind of bug with the Multiplexed content. As Stan suggested, do NOT use multiplexing - that is an incorrect workflow for Encore. I know you meant well, but besides changing the bit rate if need be, the presets work great and have the right settings for Encore-compliant file output by default.
The normal workflow from AME is to set Multiplexing to NONE, which results in the two files, .m2v video and .wav audio (uncompressed). This is the DEFAULT. You also get the other bits you mentioned which carry info for the chapter markers from Premiere. The only thing you might change in the export settings is the bitrate for longer projects so they fit the disc.
In Encore, use File > Import > As Timeline  and select the .m2v and .wav files together. This will automatically import the chapter marks (if set in Premiere) as well. The video will NOT need to be transcoded, and the uncompressed audio will be transcoded directly to high quality Dolby AC-3, skipping that MPEG "middle man". That takes just moments.
Thanks
Jeff Pulera
Safe Harbor Computers

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