Audio skipping in lip dub

I am creating a lip dub using Final Cut X 10.0.8 that has multiple sequences above an M4A audio file. At certain points the audio goes silent then resumes a second or two later. It is happening at different points in the timeline but not always at the same places. Everything is completely rendered. I have tried removing the audio and re-laying it but get the same results. Any help would be greatly appreciated.

Convert the audio to AIFF or WAV 48k. Do not use compressed audio in production.

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