Audio Skips After Being Burned?

I have recently burned 2 DVD's using Encore CS5.1. In both, I have multiple timelines, all with individual videos. After checking each DVD, I have come across a recurring issue. After burning the DVD's, one timeline (video) on each DVD has audio issues. The audio files skips, but the video plays normally. Why is this, and how do I fix it?
I am using AVI videos, and having Encore transcode them.

Stan,
The audio came from many sources, including DSLR clips, wav files, camcorder 5.1 clips, etc. My first attempt to transcode and burn in blu-ray was successful, but I had not yet added my Encore menus, my After Effects stuff, my additional Premiere Pro timelines (as extras on the disc). By successful, I mean that the video and audio worked as they were supposed to.
Then I added all my menus and buttons, my timelines, my encore chapter markers (in Premiere Pro), and I linked the buttons to the chapter markers in Encore. When I burned the disc, I discovered that, although the navigation worked perfectly, there was that strange audio hiccup in my original (non-extras) sequence's timeline. By the way, the additional (extras) timelines play perfectly with both video and audio.
I am now resorting to exporting the original sequence as an H.264 Blu-ray media file from Premiere Pro, and will attempt to import it into Encore to replace the offending timeline. I guess that means that I will have to relink all my buttons to new chapter markers in the new timeline. I'm not sure what else I can do.
Thanks for the help. I hope I answered your question.
Mike Lynch

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