Audio sync problem when exporting between FCP6 and Soundtrack

Hi, I'm a newbie to this so apologies for any glaring errors.
I've recently upgraded to FC studio 2 and have exported the audio of an existing 20 minute custom format quicktime project (720x408, 30fps,) to soundtrack for sweetening.
Trouble is, when returning the audio back to FCP, the audio is shorter by several seconds and therefor totally out of sync! I've also tried outputting the multitrack audio from within FCP and bringing it back in as a single file and this is also out by several seconds. The output settings are the same as the project.
If I do nothing to the audio and simply send it to compressor; the M2v and it's aiff play in sync in Quicktime.
Any ideas or work arounds?
Thanks in advance for any advice.

Check you have the very latest version of QuickTime (7.7.1 at time of writing): QuickTime 7.7.1 for Windows
Cheers,
Neale
Insanity is hereditary, you get it from your children

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